| All India Institute of Medical Sciences (AIIMS) | New Delhi |
| Aryabhatta Research Institute of Observational Sciences | Nainital |
| Birbal Sahni Institute of Palaeobotany | Lucknow |
| Bose Institute | Kolkata |
| Central Electronics Engineering Research Institute | Pilani |
| Central Food Technological Research Institute | Mysore |
| Central Glass and Ceramic Research Institute (CGCRI) | Kolkata |
| Central Institute for Cotton Research | Nagpur |
| Central Institute of Agricultural Engineering | Bhopal |
| Central Institute of Brackish Water Aquaculture | Tamil Nadu |
| Central Institute of Educational Technology | New Delhi |
| Central Institute of Fisheries Education | Mumbai |
| Central Institute of Fisheries, Nautical and Engineering Training | Kochi |
| Central Institute of Fresh Water Aquaculture | Bhubaneswar |
| Central Institute of Indian Languages | Mysore |
| Central Institute of Plastics Engineering & Technology | Bhubaneswar |
| Central Institute of Psychiatry | Ranchi |
| Central Institute of Medicinal and Aromatic Plants | Lucknow |
| Central Institute of Road Transport (CIRT) | Pune |
| Central Leather Research Institute | Adyar, Chennai |
| Central Institute of Technology Kokrajhar (CIT) | Kokrajhar |
| Central Mine Planning & Design Institute Limited | Ranchi |
| Central Research Institute for Dryland Agriculture | Hyderabad |
| Central Sheep & Wool Research Institute | Avikanagar |
| Central Soil Salinity Research Institute | New Delhi |
| Centre for Cultural Resources and Training (CCRT) | New Delhi |
| Centre for Development Studies | Thiruvananthpuram |
| Centre for Excellence in Basic Sciences | Mumbai |
| College of Defence Management | Secunderabad |
| Foreign Service Institute | New Delhi |
| Harcourt Butler Technological Institute | Kanpur |
| Harish Chandra Research Institute (HRI) | Allahabad |
| Indian Agricultural Research Institute (IARI) | New Delhi |
| Indian Association for the Cultivation of Science (IACS) | Kolkata |
| Indian Diamond Institute | Surat |
| Indian Institute of Astrophysics | Bangalore |
| Indian Institute of Chemical Biology (IICB) | Kolkata |
| Indian Institute of Chemical Technology | Hyderabad |
| Indian Institute of Ecology and Environment | New Delhi |
| Indian Institute of Foreign Trade (IIFT) | New Delhi |
| Indian Institute of Forest Management (IIFM) | Bhopal |
| Indian Institute of Forestry Research and Education | Dehradun, Shimla, Ranchi, Jorhat, Jabalpur, Jodhpur |
| Indian Institute of Information Technology (IIIT) | Gwalior, Allahabad, Jabalpur, Kanchipuram[4] |
| Indian Institute of Management | Ahmedabad, Bangalore, Kozhikode, Indore, Lucknow |
| Indian Institute of Information Technology & Management | Gwalior |
| Indian Institute of Mass Communication (IIMC) | New Delhi |
| Indian Institute of Petroleum | Dehradun |
| Indian Institute of Plantation Management | Bangalore |
| Indian Institute of Pulses Research | Kanpur |
| Indian Institute of Remote Sensing (IIRS) | Dehradun |
| Indian Institute of Science (IISc) | Bangalore |
| Indian Institute of Science Education and Research (IISER) | Kolkata, Pune, Mohali, Bhopal, Thiruvananthpuram |
| Indian Institute of Social Welfare and Business Management | Kolkata |
| Indian Institute of Soil Sciences | Bhopal |
| Indian Institute of Space Science and Technology (IIST) | Thiruvananthpuram |
| Indian Institute of Spices Research | Kozhikode |
| Indian Institute of Sugarcane Research | Lucknow |
| Indian Institute of Technology (IIT) | Kharagpur, Kanpur, Mumbai, Chennai, Delhi, Guwahati,Bhubaneswar, Roorkee, Ropar, Hyderabad, Gandhinagar, Jodhpur,Patna, Mandi, Indore, Varanasi |
| Indian Institute of Tourism and Travel Management | Gwalior |
| Indian Institute of Tropical Meteorology | Pune |
| Indian Lac Research Institute | Ranchi |
| National Institute Of Technical Teachers Training and Research | Chennai |
| International Institute for Population Sciences (IIPS) | Mumbai |
| Indian School of Mines | Dhanbad |
| Indian Statistical Institute | Bangalore, Kolkata, Delhi |
| Indian Veterinary Research Institute | Bareilly |
| Indira Gandhi Institute of Development Research | Mumbai |
| Indira Gandhi Centre for Atomic Research (IGCAR) | Kalpakkam |
| Institute for Studies in Industrial Development | New Delhi |
| Institute of Defence Studies and Analyses | New Delhi |
| Institute of Economic Growth | New Delhi |
| Institute of Food Security | Gurgaon |
| Institute of Genomics and Integrative Biology (IGIB) | New Delhi |
| Institute of Mathematical Sciences (IMSc) | Chennai |
| Institute of Physics (IOP) | Bhubaneswar |
| Institute for Plasma Research (IPR) | Gandhinagar |
| Institute of Rural Management | Anand |
| Institute of Secretarial Training and Management | New Delhi |
| Institute for Studies in Industrial Development | New Delhi |
| International Institute for Population Sciences | Mumbai |
| Jawaharlal Nehru Centre for Advanced Scientific Research(JNCASR) | Bangalore |
| Kendriya Hindi Sansthan | Agra |
| Lakshmibai National Institute of Physical Education (LNIPE) | Gwalior |
| Morarji Desai National Institute of Yoga | New Delhi |
| National Academy of Agricultural Research Management | Rajendranagar |
| National Academy of Agricultural Sciences | New Delhi |
| National Academy of Construction | Hyderabad |
| National Academy of Customs, Excise and Narcotics (NACEN) | Kolkata |
| National Botanical Research Institute (NBRI) | Lucknow |
| National Civil Defence College | Nagpur |
| National Dairy Research Institute | Haringhata (West Bengal) |
| National Defence College of India | Delhi |
| National Environmental Engineering Research Institute | Nagpur |
| National Institute of Agricultural Extension Management | Hyderabad |
| National Institute of Agriculture Marketing | Jaipur |
| National Institute of Construction Management and Research | Mumbai |
| National Institute of Design | Ahmedabad |
| National Institute of Disaster Management | New Delhi |
| National Institute Homeopathy | Kolkata |
| National Institute of Hydrology | Belgaum, Roorkee |
| Indian Institute of Information Technology | Allahabad |
| Indian Institute of Information Technology and Management | Gwalior |
| National Institute of Mental Health & NeuroSciences | Bangalore |
| National Institute of Technology (NIT) | Goa |
| National Institute of Oceanography (NIO) | Goa |
| National Institute of Ocean Technology | Chennai |
| National Institute of Pharmaceutical Education and Research | Mohali Ahmedabad Raebareli Hyderabad Guwahati Hajipur Kolkata |
| National Institute of Rural Development | Hyderabad |
| National Institute of Science Communication (NISCOM) | New Delhi |
| National Institute of Science Communication and Information Resources | Delhi |
| National Institute of Science Education and Research (NISER) | Bhubaneswar |
| National Institute of Technology | Agartala, Allahabad, Bhopal, Kozhikode, Durgapur, Hamirpur,Jaipur, Jalandhar, Jamshedpur, Kurukshetra, Shillong, Nagpur,Patna, Raipur, Rourkela, Silchar, Srinagar, Surat, Surathkal,Tiruchirappalli, Warangal, Yupia |
| National Institute of Urban Affairs | New Delhi |
| National Institute of Water Sports | Goa |
| National Museum Institute | New Delhi |
| National Power Training Institute | Faridabad |
| National Tuberculosis Institute | Bangalore |
| Netaji Subhas National Institute of Sports (NSNIS) | Patiala |
| Physical Research Laboratory (PRL) | Ahmedabad |
| Raman Research Institute (RRI) | Bangalore |
| Saha Institute of Nuclear Physics | Kolkata |
| Sanjay Gandhi Post Graduate Institute of Medical Sciences | Lucknow |
| S.N. Bose National Centre for Basic Sciences (SNBNCBS) | Kolkata |
| Sher-i-Kashmir Institute of Medical Sciences | Srinagar |
| State Institute of Public Administration and Rural Development | Agartala |
| Sant longowal institute of Engineering and technology(SLIET) | Sangrur |
| Tata Institute of Social Sciences | Mumbai |
| Tata Institute of Fundamental Research (TIFR) | Mumbai, Hyderabad |
| V. V. Giri National Labour Institute | New Delhi |
| Directorate of Forest Education (DFE) | Dehradun |
| Indira Gandhi National Forest Academy (IGNFA) | Dehradun |
| Indian Institute of Horticulture Research (IIBR) | Goa |
| Indian Institute of Hotel Management | Goa |
| National Institute of Animal Welfare | Faridabad |
| Variable Energy Cyclotron Centre | Kolkata |
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